Detection of over-represented motifs corresponding to known TFBSs via motif clustering and matching

DOI10.1016/j.camwa.2009.10.016zbMath1189.68116OpenAlexW2035027820MaRDI QIDQ980270

Li-Cheng Jiao, Li-Fang Liu

Publication date: 28 June 2010

Published in: Computers \& Mathematics with Applications (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.camwa.2009.10.016

zbMATH Keywords

\(p\)-valuestatistical significancetranscription factorsbinding sitesmotif discovery

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of graph theory (05C90) Pattern recognition, speech recognition (68T10) Protein sequences, DNA sequences (92D20)

Uses Software

• BioProspector
• MotifCM
• TRANSFAC
• JASPAR

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