Parallelization and optimization of Mfold on shared memory system

DOI10.1016/J.PARCO.2010.05.002zbMath1204.68265OpenAlexW2018951479MaRDI QIDQ991149

Jiulong Shan, Guangzhong Sun, Qiankun Miao, Guo-Liang Chen

Publication date: 2 September 2010

Published in: Parallel Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.parco.2010.05.002

zbMATH Keywords

optimizationMPIparallelizationshared memory systemRNA secondary structureMfold

Mathematics Subject Classification ID

Parallel algorithms in computer science (68W10)

Uses Software

• MPI/MPICH
• VTune
• NAS Parallel Benchmarks

Cites Work

• A high-performance, portable implementation of the MPI message passing interface standard

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