Fine-grained parallel RNA secondary structure prediction using SCFGs on FPGA

DOI10.1016/J.PARCO.2010.05.005zbMath1204.68269OpenAlexW2023074165MaRDI QIDQ991151

Fei Xia, Dan Zhou, Yong Dou, Xin Li

Publication date: 2 September 2010

Published in: Parallel Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.parco.2010.05.005

zbMATH Keywords

bioinformaticsFPGARNAhardware acceleratorsecondary structure predictionparallel CYK algorithmSCFG model

Mathematics Subject Classification ID

Parallel algorithms in computer science (68W10) Computer system organization (68M99)

Uses Software

• ClustalW
• Infernal
• PSI-BLAST
• BLAST

Cites Work

• Unnamed Item
• Algorithms for Loop Matchings
• Biological Sequence Analysis
• Computational Science – ICCS 2005

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