On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures

DOI10.1016/j.jpdc.2007.03.007zbMath1125.68377OpenAlexW2061990781MaRDI QIDQ995645

Bharadwaj Veeravalli, Diana H. P. Low, David A. Bader

Publication date: 3 September 2007

Published in: Journal of Parallel and Distributed Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jpdc.2007.03.007

zbMATH Keywords

protein sequencesmultiple sequence alignmentdivisible loadsmesh topologySmith-Waterman algorithm

Mathematics Subject Classification ID

Searching and sorting (68P10) Performance evaluation, queueing, and scheduling in the context of computer systems (68M20)

Related Items (1)

Integrating Amdahl-like Laws and Divisible Load Theory

This page was built for publication: On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures