QuantSeq 3' mRNA-Seq testing data set based on samples from NCBI Bioproject PRJNA509074

DOI10.5281/zenodo.10572746Zenodo10572746MaRDI QIDQ6700387

Dataset published at Zenodo repository.

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Publication date: 26 January 2024

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Description

As described in the contained README.md file, this is a QuantSeq 3 mRNA-Seq testing dataset that has been derived from data published in this study:Corley, S.M., Troy, N.M., Bosco, A. et al. QuantSeq. 3 Sequencing combined with Salmon provides a fast, reliable approach for high throughput RNA expression analysis. Sci Rep 9, 18895 (2019). https://doi.org/10.1038/s41598-019-55434-x In short, the respective dataset has been downloaded, mapped against the human transcriptome, and reduced to the reads that map to two smaller gene sets. One of the gene sets was found as enriched for differentially expressed genes in the original publication, the other gene set wasn't. This leads to a reasonably small testing dataset, that nevertheless has useful expected results. For details of the data generation, see the contained README.md file and the self-contained workflow used for generating it: https://doi.org/10.5281/zenodo.10572324The MSigDB gene sets are used according to their Creative Commons Attribution 4.0 International License, which is given here:https://www.gsea-msigdb.org/gsea/msigdb_license_terms.jsp

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