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SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark - MaRDI portal

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SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark

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DOI10.5281/zenodo.10160381Zenodo10160381MaRDI QIDQ6719527

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 20 November 2023

Copyright license: No records found.



Description

In this repository, we present the PacBio and ONT simulated datasets used for benchmarking transcriptome reconstruction tools, as evaluated in the manuscript titled "SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark". The dataset includes simulated long reads, short reads, CAGE peaks, and a reduced reference annotation. Additionally, we have included reconstructed transcriptomes from each method, along with SQANTI3 output files. The SQANTI-SIM software can be accessed on GitHub at the following URL: https://github.com/ConesaLab/SQANTI-SIM.






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