DESeq2
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Software:1353038
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Source code repository: https://github.com/mikelove/DESeq2
Related Items (26)
Optimal false discovery rate control for large scale multiple testing with auxiliary information ⋮ Bayesian analysis of RNA-Seq data using a family of negative binomial models ⋮ Maximum Rank Reproducibility: A Nonparametric Approach to Assessing Reproducibility in Replicate Experiments ⋮ Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes ⋮ Discrimination of attractors with noisy nodes in Boolean networks ⋮ \texttt{EBADIMEX}: an empirical Bayes approach to detect joint differential expression and methylation and to classify samples ⋮ Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes ⋮ \texttt{TopKLists}: a comprehensive \texttt{R} package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists ⋮ Model-based approach to the joint analysis of single-cell data on chromatin accessibility and gene expression ⋮ Model-based feature selection and clustering of RNA-seq data for unsupervised subtype discovery ⋮ An empirical Bayes change-point model for transcriptome time-course data ⋮ Symmetric directional false discovery rate control ⋮ Improved outcome prediction across data sources through robust parameter tuning ⋮ A compositional model to assess expression changes from single-cell RNA-seq data ⋮ Poisson–Tweedie mixed-effects model: A flexible approach for the analysis of longitudinal RNA-seq data ⋮ Modeling microbial abundances and dysbiosis with beta-binomial regression ⋮ BNP-Seq: Bayesian Nonparametric Differential Expression Analysis of Sequencing Count Data ⋮ Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data ⋮ Interactive Visualization of Hierarchically Structured Data ⋮ Modeling overdispersion heterogeneity in differential expression analysis using mixtures ⋮ Estimating cellular redundancy in networks of genetic expression ⋮ Adaptive gPCA: a method for structured dimensionality reduction with applications to microbiome data ⋮ Zero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysis ⋮ Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data ⋮ Rejoinder for “Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data” ⋮ Tuning parameter selection for a penalized estimator of species richness
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