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DESeq2 - MaRDI portal

DESeq2

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Software:1353038



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Source code repository: https://github.com/mikelove/DESeq2




Related Items (26)

Optimal false discovery rate control for large scale multiple testing with auxiliary informationBayesian analysis of RNA-Seq data using a family of negative binomial modelsMaximum Rank Reproducibility: A Nonparametric Approach to Assessing Reproducibility in Replicate ExperimentsModifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genesDiscrimination of attractors with noisy nodes in Boolean networks\texttt{EBADIMEX}: an empirical Bayes approach to detect joint differential expression and methylation and to classify samplesHierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes\texttt{TopKLists}: a comprehensive \texttt{R} package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked listsModel-based approach to the joint analysis of single-cell data on chromatin accessibility and gene expressionModel-based feature selection and clustering of RNA-seq data for unsupervised subtype discoveryAn empirical Bayes change-point model for transcriptome time-course dataSymmetric directional false discovery rate controlImproved outcome prediction across data sources through robust parameter tuningA compositional model to assess expression changes from single-cell RNA-seq dataPoisson–Tweedie mixed-effects model: A flexible approach for the analysis of longitudinal RNA-seq dataModeling microbial abundances and dysbiosis with beta-binomial regressionBNP-Seq: Bayesian Nonparametric Differential Expression Analysis of Sequencing Count DataEmpirical likelihood tests for nonparametric detection of differential expression from RNA-seq dataInteractive Visualization of Hierarchically Structured DataModeling overdispersion heterogeneity in differential expression analysis using mixturesEstimating cellular redundancy in networks of genetic expressionAdaptive gPCA: a method for structured dimensionality reduction with applications to microbiome dataZero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysisExponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq DataRejoinder for “Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data”Tuning parameter selection for a penalized estimator of species richness


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