PeakSegDP
swMATH41663CRANPeakSegDPMaRDI QIDQ1353443
Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data
Last update: 24 January 2024
Copyright license: GNU General Public License, version 3.0
Software version identifier: 2017.08.15, 2017.06.20, 2024.1.24
Source code repository: https://github.com/cran/PeakSegDP
A quadratic time dynamic programming algorithm can be used to compute an approximate solution to the problem of finding the most likely changepoints with respect to the Poisson likelihood, subject to a constraint on the number of segments, and the changes which must alternate: up, down, up, down, etc. For more info read <http://proceedings.mlr.press/v37/hocking15.html> "PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data" by TD Hocking et al, proceedings of ICML2015.
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