MIBPB

swMATH8106MaRDI QIDQ20120

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Related Items (60)

Discontinuous bubble immersed finite element method for Poisson-Boltzmann-Nernst-Planck model ⋮ Regularization methods for the Poisson-Boltzmann equation: comparison and accuracy recovery ⋮ Biomolecular surface construction by PDE transform ⋮ Efficient calculation of fully resolved electrostatics around large biomolecules ⋮ Quantum dynamics in continuum for proton transport II: Variational solvent-solute interface ⋮ A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule ⋮ Computing electrostatic binding energy with the TABI Poisson-Boltzmann solver ⋮ SDPBS web server for calculation of electrostatics of ionic solvated biomolecules ⋮ A topological approach for protein classification ⋮ Weak Galerkin methods for second order elliptic interface problems ⋮ Geometric and electrostatic modeling using molecular rigidity functions ⋮ Parallel higher-order boundary integral electrostatics computation on molecular surfaces with curved triangulation ⋮ A new Poisson-Nernst-Planck model with ion-water interactions for charge transport in ion channels ⋮ A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules ⋮ Multiscale geometric modeling of macromolecules. I: Cartesian representation ⋮ Impact of geometric, thermal and tunneling effects on nano-transistors ⋮ Second order method for solving 3D elasticity equations with complex interfaces ⋮ A Galerkin formulation of the MIB method for three dimensional elliptic interface problems ⋮ Differential geometry based solvation model. I: Eulerian formulation ⋮ On developing stable finite element methods for pseudo-time simulation of biomolecular electrostatics ⋮ Pseudo-transient ghost fluid methods for the Poisson-Boltzmann equation with a two-component regularization ⋮ A regularization approach for solving the super-Gaussian Poisson-Boltzmann model with heterogeneous dielectric functions ⋮ A two-component matched interface and boundary (MIB) regularization for charge singularity in implicit solvation ⋮ DelPhi Web Server: A Comprehensive Online Suite for Electrostatic Calculations of Biological Macromolecules and Their Complexes ⋮ A new weak Galerkin finite element method for elliptic interface problems ⋮ An interface-fitted mesh generator and virtual element methods for elliptic interface problems ⋮ Fractional Poisson-Nernst-Planck model for ion channels. I: Basic formulations and algorithms ⋮ The de Rham-Hodge analysis and modeling of biomolecules ⋮ Adaptively deformed mesh based interface method for elliptic equations with discontinuous coefficients ⋮ An implicit boundary integral method for computing electric potential of macromolecules in solvent ⋮ Modeling and computation of heterogeneous implicit solvent and its applications for biomolecules ⋮ A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver ⋮ A flux-jump preserved gradient recovery technique for accurately predicting the electrostatic field of an immersed biomolecule ⋮ A Domain Decomposition Method for the Poisson--Boltzmann Solvation Models ⋮ A meshless finite difference method for elliptic interface problems based on pivoted QR decomposition ⋮ Differential geometry based solvation model II: Lagrangian formulation ⋮ Variational Multiscale Models for Charge Transport ⋮ A relaxed weak Galerkin method for elliptic interface problems with low regularity ⋮ A Radial Basis Function Meshless Numerical Method for Solving Interface Problems in Irregular Domains ⋮ Accurate PKa Computation Using Matched Interface and Boundary (MIB) Method Based Poisson-Boltzmann Solver ⋮ Modeling and computation of heterogeneous implicit solvent and its applications for biomolecules ⋮ DASHMM Accelerated Adaptive Fast Multipole Poisson-Boltzmann Solver on Distributed Memory Architecture ⋮ MIB Galerkin method for elliptic interface problems ⋮ MIB method for elliptic equations with multi-material interfaces ⋮ Second-order Poisson-Nernst-Planck solver for ion transport ⋮ A hybrid solver of size modified Poisson-Boltzmann equation by domain decomposition, finite element, and finite difference ⋮ Interpolating stabilized moving least squares (MLS) approximation for 2D elliptic interface problems ⋮ On preconditioning the treecode-accelerated boundary integral (TABI) Poisson-Boltzmann solver ⋮ Unnamed Item ⋮ Fast and scalable algorithms for constructing solvent-excluded surfaces of large biomolecules ⋮ A super-Gaussian Poisson-Boltzmann model for electrostatic free energy calculation: smooth dielectric distribution for protein cavities and in both water and vacuum states ⋮ A new primal-dual weak Galerkin method for elliptic interface problems with low regularity assumptions ⋮ An efficient finite element iterative method for solving a nonuniform size modified Poisson-Boltzmann ion channel model ⋮ Extended HDG methods for second order elliptic interface problems ⋮ High-order fractional partial differential equation transform for molecular surface construction ⋮ Progress in developing Poisson-Boltzmann equation solvers ⋮ Fully implicit ADI schemes for solving the nonlinear Poisson-Boltzmann equation ⋮ Analysis of fast boundary-integral approximations for modeling electrostatic contributions of molecular binding ⋮ Matched interface and boundary method for elasticity interface problems ⋮ Finite volume formulation of the MIB method for elliptic interface problems

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