PAML
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Related Items (30)
Ancestral sequence reconstruction for co-evolutionary models ⋮ Classification of molecular sequence data using Bayesian phylogenetic mixture models ⋮ Phylogenetic estimation with partial likelihood tensors ⋮ Phylogenetic analysis of DNA sequences based on fractional Fourier transform ⋮ The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages ⋮ The limiting distribution of the effective population size of the ancestor of humans and chimpanzees ⋮ Genetic codes as evolutionary filters: subtle differences in the structure of genetic codes result in significant differences in patterns of nucleotide substitution ⋮ The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives ⋮ Comparisons of d\(N\)/d\(S\) are time dependent for closely related bacterial genomes ⋮ Distribution of distances between topologies and its effect on detection of phylogenetic recombination ⋮ Synonymous and nonsynonymous distances help untangle convergent evolution and recombination ⋮ The EM algorithm and the rise of computational biology ⋮ Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites ⋮ Computational model for analyzing the evolutionary patterns of the neuraminidase gene of influenza A/H1N1 ⋮ Mathematical properties of some measures of evolutionary distance ⋮ Power of the likelihood ratio test for models of DNA base substitution ⋮ Evolutionary analysis and structural characterization of \textit{Aquilaria sinensis} sesquiterpene synthase in agarwood formation: a computational study ⋮ Modeling a trait-dependent diversification process coupled with molecular evolution on a random species tree ⋮ Comparing strategies to preserve evolutionary diversity ⋮ Bioinformatics. Volume I. Data, sequence analysis, and evolution ⋮ Distributed and sequential algorithms for bioinformatics ⋮ Bioinformatics and the Cell ⋮ EdiPy: A resource to simulate the evolution of plant mitochondrial genes under the RNA editing ⋮ Aminoacyl-tRNA synthetase classes and groups in prokaryotes ⋮ Improved variance estimators for one- and two-parameter models of nucleotide substitution ⋮ Modeling the effect of changing selective pressures on polymorphism and divergence ⋮ Error Detection and Correction of Gene Trees ⋮ Multilocus phylogenetic analysis with gene tree clustering ⋮ Visualizing Codon Usage Within and Across Genomes: Concepts and Tools ⋮ Fast computation of maximum likelihood trees by numerical approximation of amino acid replacement probabilities
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