MUSCLE
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Related Items (50)
A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses ⋮ Multiobjective artificial fish swarm algorithm for multiple sequence alignment ⋮ Data mining techniques for the life sciences ⋮ Sequence graph transform (SGT): a feature embedding function for sequence data mining ⋮ \textit{In silico} analysis of glutathione S-transferase supergene family revealed hitherto unreported insect specific \({\delta}\)- and \({\varepsilon}\)-GSTs and mammalian specific \({\mu}\)-GSTs in \textit{Ixodes scapularis} (Acari: Ixodidae) ⋮ Low complexity regions (LCRs) contribute to the hypervariability of the HIV-1 gp120 protein ⋮ Optimal implementations of UPGMA and other common clustering algorithms ⋮ Indexing factors with gaps ⋮ A time warping approach to multiple sequence alignment ⋮ A global averaging method for dynamic time warping, with applications to clustering ⋮ The EM algorithm and the rise of computational biology ⋮ Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis ⋮ Unnamed Item ⋮ Comparison of alignment free string distances for complete genome phylogeny ⋮ Use of image texture analysis to find DNA sequence similarities ⋮ Modeling the distribution of distance data in Euclidean space ⋮ Geometric combinatorics and computational molecular biology: Branching polytopes for RNA sequences ⋮ Evolutionary analysis and structural characterization of \textit{Aquilaria sinensis} sesquiterpene synthase in agarwood formation: a computational study ⋮ Computational analysis in designing T cell epitopes enriched peptides of Ebola glycoprotein exhibiting strong binding interaction with HLA molecules ⋮ In silico analysis of antibody triggering biofilm associated protein in \textit{Acinetobacter baumannii} ⋮ Bayesian modelling of compositional heterogeneity in molecular phylogenetics ⋮ An overview of multiple sequence alignments and cloud computing in bioinformatics ⋮ A neutral evolution test derived from a theoretical amino acid substitution model ⋮ Identifiability of phylogenetic parameters from \(k\)-mer data under the coalescent ⋮ ModEnzA: Accurate Identification of Metabolic Enzymes Using Function Specific Profile HMMs with Optimised Discrimination Threshold and Modified Emission Probabilities ⋮ \textsc{Rime}: repeat identification ⋮ Bioinformatics. Volume I. Data, sequence analysis, and evolution ⋮ Gaussian Process‐Based Bayesian Nonparametric Inference of Population Size Trajectories from Gene Genealogies ⋮ Protein-protein interactions can be predicted using coiled coil co-evolution patterns ⋮ Global alignment of molecular sequences via ancestral state reconstruction ⋮ MSAID: multiple sequence alignment based on a measure of information discrepancy ⋮ Pattern-constrained multiple polypeptide sequence alignment ⋮ A novel clustering method via nucleotide-based Fourier power spectrum analysis ⋮ A potential in silico antibody-antigen based diagnostic test for precise identification of \textit{Acinetobacter baumannii} ⋮ A Dirichlet process mixture of hidden Markov models for protein structure prediction ⋮ Adaptation of the method of musical composition for solving the multiple sequence alignment problem ⋮ Comparative gene finding. Models, algorithms and implementation ⋮ A Lagrangian relaxation approach for the multiple sequence alignment problem ⋮ Generalizing rate heterogeneity across sites in statistical phylogenetics ⋮ Multiple Biological Sequence Alignment: Scoring Functions, Algorithms and Applications ⋮ Clustering Categorical Data via Ensembling Dissimilarity Matrices ⋮ Summarizing a set of time series by averaging: from Steiner sequence to compact multiple alignment ⋮ Compositional properties of alignments ⋮ Large-Scale Multiple Sequence Alignment and Phylogeny Estimation ⋮ Discrete wavelet packet transform based discriminant analysis for whole genome sequences ⋮ Exact Multiple Sequence Alignment by Synchronized Decision Diagrams ⋮ ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks ⋮ ADLD: a novel graphical representation of protein sequences and its application ⋮ Competitive evolution of H1N1 and H3N2 influenza viruses in the United States: a mathematical modeling study ⋮ Information-Theoretic Foundations of DNA Data Storage
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