PatternHunter
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Related Items (29)
An efficient similarity search based on indexing in large DNA databases ⋮ Sensitivity analysis and efficient method for identifying optimal spaced seeds ⋮ Compressed spaced suffix arrays ⋮ Approximate search of short patterns with high error rates using the \(01^\ast 0\) lossless seeds ⋮ On the complexity of the spaced seeds ⋮ Optimal spaced seeds for faster approximate string matching ⋮ Indexing factors with gaps ⋮ Faster exact distributions of pattern statistics through sequential elimination of states ⋮ Minimal auxiliary Markov chains through sequential elimination of states ⋮ Metagenomic reads binning with spaced seeds ⋮ Design and analysis of periodic multiple seeds ⋮ Better spaced seeds using quadratic residues ⋮ Graph connectivity, partial words, and a theorem of Fine and Wilf ⋮ Hardness of optimal spaced seed design ⋮ Designing Efficient Spaced Seeds for SOLiD Read Mapping ⋮ Comparative Assessment of Alignment Algorithms for NGS Data: Features, Considerations, Implementations, and Future ⋮ CUSHAW Suite: Parallel and Efficient Algorithms for NGS Read Alignment ⋮ Bioinformatics. Volume I. Data, sequence analysis, and evolution ⋮ Data mining in bioinformatics ⋮ GAME: A simple and efficient whole genome alignment method using maximal exact match filtering ⋮ Combinatorics on partial word correlations ⋮ Seed optimization for i.i.d. similarities is no easier than optimal Golomb ruler design ⋮ An Experimental Study of Compressed Indexing and Local Alignments of DNA ⋮ Algorithms in Computational Molecular Biology ⋮ Masking patterns in sequences: A new class of motif discovery with don't cares ⋮ Lossless filter for multiple repetitions with Hamming distance ⋮ On spaced seeds for similarity search ⋮ Distributions of pattern statistics in sparse Markov models ⋮ Fast Spaced Seed Hashing
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