Smoldyn
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Software:35723
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Related Items (22)
Simulation of stochastic diffusion via first exit times ⋮ Particle-Based Multiscale Modeling of Calcium Puff Dynamics ⋮ Analysis and Design of Jump Coefficients in Discrete Stochastic Diffusion Models ⋮ Multiscale Simulation of Stochastic Reaction-Diffusion Networks ⋮ Comparative study of metaheuristics for the curve-fitting problem: modeling neurotransmitter diffusion and synaptic receptor activation ⋮ Multiscale modeling of diffusion in a crowded environment ⋮ Accurate Particle-Based Reaction Algorithms for Fixed Timestep Simulators ⋮ Stochastic reaction-diffusion processes with embedded lower-dimensional structures ⋮ Smoluchowski Reaction Kinetics for Reactions of Any Order ⋮ Executable biochemical space for specification and analysis of biochemical systems ⋮ Flexible single molecule simulation of reaction-diffusion processes ⋮ Reactive Boundary Conditions as Limits of Interaction Potentials for Brownian and Langevin Dynamics ⋮ Diffusion-controlled reactions modeling in Geant4-DNA ⋮ Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations ⋮ Coarse-graining molecular dynamics: stochastic models with non-Gaussian force distributions ⋮ Unnamed Item ⋮ Unnamed Item ⋮ Spatial stochastic intracellular kinetics: a review of modelling approaches ⋮ Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations ⋮ Coupling Particle-Based Reaction-Diffusion Simulations with Reservoirs Mediated by Reaction-Diffusion PDEs ⋮ Bayesian learning of effective chemical master equations in crowded intracellular conditions ⋮ Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons
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