hwde

Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci

Last update: 21 August 2023

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 0.67, 0.2, 0.3, 0.5, 0.61, 0.62, 0.63, 0.64, 0.65, 0.66, 0.67-3

Source code repository: https://github.com/cran/hwde

Description

Fits models for genotypic disequilibria, as described in Huttley and Wilson (2000) <doi:10.1093/genetics/156.4.2127>, Weir (1996) and Weir and Wilson (1986). Contrast terms are available that account for first order interactions between loci. Also implements, for a single locus in a single population, a conditional exact test for Hardy-Weinberg equilibrium.

Cites work

Testing for Concordant Equilibria Between Population Samples

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