diversitree

swMATH26122CRANdiversitreeMaRDI QIDQ37854

Comparative 'Phylogenetic' Analyses of Diversification

Roger Sidje, Richard G. Fitzjohn, Karen Magnuson-Ford, Emma Goldberg

Last update: 20 December 2023

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 0.9-16, 0.9-18, 0.6-2, 0.6-3, 0.6-5, 0.7-2, 0.9-1, 0.9-3, 0.9-5, 0.9-6, 0.9-7, 0.9-8, 0.9-9, 0.9-10, 0.9-11, 0.9-13, 0.9-14, 0.9-15, 0.9-19, 0.9-20, 0.10-0

Source code repository: https://github.com/cran/diversitree

Description

Contains a number of comparative 'phylogenetic' methods, mostly focusing on analysing diversification and character evolution. Contains implementations of 'BiSSE' (Binary State 'Speciation' and Extinction) and its unresolved tree extensions, 'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE', 'GeoSSE', and 'BiSSE-ness' Other included methods include Markov models of discrete and continuous trait evolution and constant rate 'speciation' and extinction.

Related Items (8)

Using multitype branching models to analyze bacterial pathogenicity ⋮ Modeling a trait-dependent diversification process coupled with molecular evolution on a random species tree ⋮ Efficient Bayesian inference of general Gaussian models on large phylogenetic trees ⋮ hisse ⋮ Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts ⋮ HCTDesign ⋮ Linking micro and macroevolution in the presence of migration ⋮ The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events

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