Biomolecular topology: modelling and analysis
type: Item
instance of: scholarly article
title: Biomolecular topology: modelling and analysis
zbMATH Open document ID: 1501.55006
author: Jian Liu
author: Kelin Xia
author: Jie Wu
author: Stephen Yau
author: G. W. Wei
publication date: 2022-11-11T00:00:00Z
Mathematics Subject Classification ID: 55N31
Mathematics Subject Classification ID: 92E10
Mathematics Subject Classification ID: 92D20
Mathematics Subject Classification ID: 62R40
Mathematics Subject Classification ID: 92C40
Mathematics Subject Classification ID: 57Z10
Mathematics Subject Classification ID: 55-02
Mathematics Subject Classification ID: 57-02
Mathematics Subject Classification ID: 92-02
zbMATH DE Number: 7615095
zbMATH Keywords: persistent homology
zbMATH Keywords: topological data analysis
zbMATH Keywords: biomolecular topology
zbMATH Keywords: protein structure
zbMATH Keywords: machine learning
cites work: Open Babel
cites work: CHARMM
cites work: Persistence Images: A Stable Vector Representation of Persistent Homology
cites work: Algebraic geometry over the complex numbers
cites work: Distributed Computation of Persistent Homology
cites work: PHAT – Persistent Homology Algorithms Toolbox
cites work: Q5743482
cites work: jHoles: a tool for understanding biological complex networks via clique weight rank persistent homology
cites work: Q4398864
cites work: Q3961493
cites work: Statistical topological data analysis using persistence landscapes
cites work: A statistical approach to persistent homology
cites work: A topological approach for protein classification
cites work: A Generalization of the Schur Complement by Means of the Moore–Penrose Inverse
cites work: Topology and data
cites work: Computing Multidimensional Persistence
cites work: The theory of multidimensional persistence
cites work: PERSISTENCE BARCODES FOR SHAPES
cites work: The Hodge theory of algebraic maps
cites work: Hodge theory of SKT manifolds
cites work: The Persistence Space in Multidimensional Persistent Homology
cites work: Nanotechnology: science and computation. Dedicated to Nadrian C. Seeman on the occasion of his 60th birthday.
cites work: Q5691133
cites work: Q3601530
cites work: Simplicial homotopy theory
cites work: Kron Reduction of Graphs With Applications to Electrical Networks
cites work: Q3655278
cites work: Topological persistence and simplification
cites work: A calculus for rational tangles: applications to DNA recombination
cites work: Barcodes: The persistent topology of data
cites work: Clique topology reveals intrinsic geometric structure in neural correlations
cites work: On the path homology theory of digraphs and Eilenberg-Steenrod axioms
cites work: Path complexes and their homologies
cites work: Cohomology of digraphs and (undirected) graphs
cites work: On a cohomology of digraphs and Hochschild cohomology
cites work: Homologies of digraphs and Künneth formulas
cites work: Higher dimensional discrete Cheeger inequalities
cites work: Toward a spectral theory of cellular sheaves
cites work: Q4414682
cites work: Alignment-free comparison of genome sequences by a new numerical characterization
cites work: Geometric pattern matching under Euclidean motion
cites work: Simplicial networks and effective resistance
cites work: Hodge Laplacians on Graphs
cites work: A note on the Hodge star operator
cites work: Homological connectivity of random k -dimensional complexes
cites work: Morse theory for filtrations and efficient computation of persistent homology
cites work: Q3424748
cites work: Q3827224
cites work: A tiling approach to virus capsid assembly explaining a structural puzzle in virology
cites work: Mathematical virology: a novel approach to the structure and assembly of viruses
cites work: HERMES: persistent spectral graph software
cites work: Homotopy continuation for the spectra of persistent Laplacians
cites work: Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance
cites work: The de Rham-Hodge analysis and modeling of biomolecules
cites work: Computing persistent homology

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: Open Babel

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: CHARMM

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: LAMG

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: CliqueTop

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: BLAST

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: jHoles

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: Ripser

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: Rdkit

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: TDA

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: Dionysus

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: mCSM

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: Gudhi

Biomolecular topology: modelling and analysis (describes a project that uses)
describes a project that uses: GitHub

Biomolecular topology: modelling and analysis (MaRDI profile type)
MaRDI profile type: Publication

Biomolecular topology: modelling and analysis (full work available at URL)
full work available at URL: s10114-022-2326-5

Biomolecular topology: modelling and analysis (OpenAlex ID)
OpenAlex ID: W4308908687

Biomolecular topology: modelling and analysis (DOI)
DOI: 10.1007/S10114-022-2326-5

Biomolecular topology: modelling and analysis (published in)
published in: Acta Mathematica Sinica, English Series