Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
type: Item
instance of: scholarly article
title: Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
zbMATH Open document ID: 1256.68052
author: Jason Pell
author: Arend Hintze
author: Rosangela Canino-Koning
author: Adina Howe
author: James M. Tiedje
author: C. Titus Brown
published in: Proceedings of the National Academy of Sciences
publication date: 2013-02-02T00:00:00Z
full work available at URL: https://arxiv.org/abs/1112.4193
Mathematics Subject Classification ID: 68P05
Mathematics Subject Classification ID: 05C80
Mathematics Subject Classification ID: 05C90
Mathematics Subject Classification ID: 92-08
Mathematics Subject Classification ID: 92D10
zbMATH DE Number: 6133965
zbMATH Keywords: deep sequencing
zbMATH Keywords: complex populations
zbMATH Keywords: memory-efficient graph representation
zbMATH Keywords: \(k\)-mer connectivity
describes a project that uses: ALLPATHS
describes a project that uses: GAGE
MaRDI profile type: Publication
OpenAlex ID: W2163830511
Wikidata QID: Q36170818
arXiv ID: 1112.4193
cites work: An Eulerian path approach to DNA fragment assembly
cites work: Space/time trade-offs in hash coding with allowable errors
cites work: Q3550134
cites work: Evolutionary Bioinformatics
cites work: Network Applications of Bloom Filters: A Survey
DBLP publication ID: journals/pnas/PellHCHTB12
DOI: 10.1073/PNAS.1121464109
description: scientific article; zbMATH DE number 6133965