Origin and fate of supergenes in Atlantic cod
type: Item
instance of: data set
description: Input and output files for analyses of divergence times of Gadinae withStarBEAST2 gadinae_starbeast_alignments.tgz gadinae_starbeast.xml gadinae_starbeast.log gadinae_starbeast.trees gadinae_starbeast.tre Input and output files for analyses of divergence times and introgression among Gadus, Arctogadus, and Boreogaduswith AIM gadus_arctogadus_boreogadus_aim_alignments.tgz gadus_arctogadus_boreogadus_aim.xml gadus_arctogadus_boreogadus_aim.log gadus_arctogadus_boreogadus_aim.trees gadus_arctogadus_boreogadus_aim_bpp0763.tre gadus_arctogadus_boreogadus_aim_bpp0234.tre Dataset used for analyses ofintrogression among Gadus, Arctogadus, and Boreogaduswith Dsuite gadus_arctogadus_boreogadus_dsuite.vcf.gz Alignmentsand output trees for analyses of tree-based signals of introgression among Gadus, Arctogadus, and Boreogaduswith IQ-TREE gadus_arctogadus_boreogadus_iqtree_alignments.tgz gadus_arctogadus_boreogadus_iqtree_trees.tgz Datasets used for supergene-specificanalyses of linkage disequilibrium in Gadus morhua with PLINK gadus_morhua_supergene_lg01_plink.map gadus_morhua_supergene_lg01_plink.ped gadus_morhua_supergene_lg02_plink.map gadus_morhua_supergene_lg02_plink.ped gadus_morhua_supergene_lg07_plink.map gadus_morhua_supergene_lg07_plink.ped gadus_morhua_supergene_lg12_plink.map gadus_morhua_supergene_lg12_plink.ped Input and output files for analyses of divergence times among Gadus morhua populations with SNAPP gadus_morhua_outside_supergenes_snapp.vcf.gz gadus_morhua_outside_supergenes_snapp.xml gadus_morhua_outside_supergenes_snapp.log gadus_morhua_outside_supergenes_snapp.tre gadus_morhua_outside_supergenes_snapp.trees Dataset used for analyses ofintrogression among Gadus morhua populationswith Dsuite gadus_morhua_outside_supergenes_dsuite.vcf.gz Dataset used for analyses ofdemograpy ofGadus morhuapopulations with Relate gadus_morhua_outside_supergenes_relate.vcf.gz Input and output files for supergene-specific analyses of divergence times among Gadus morhua popula…
publication date: 2021-08-01T00:00:00Z
author: Michael Matschiner
author: Julia Maria Isis Barth
author: Ole Kristian Tørresen
author: Bastiaan Star
author: Helle Tessand Baalsrud
author: Marine Servane Ono Brieuc
author: Christophe Pampoulie
author: Bradbury
author: Jakobsen
author: Jentoft
Zenodo ID: 4560275
DOI: 10.5281/zenodo.4560275
copyright license: Creative Commons Attribution 4.0 International
MaRDI profile type: Dataset
description: Dataset published at Zenodo repository.