netgsa
type: Item
instance of: R package
software version identifier: 4.0.4
software version identifier: 1.0
software version identifier: 2.0
software version identifier: 3.0
software version identifier: 3.1.0
software version identifier: 4.0.0
software version identifier: 4.0.1
software version identifier: 4.0.2
software version identifier: 4.0.3
software version identifier: 4.0.5
maintained by: Michael Hellstern
CRAN project: netgsa
programmed in: R
last update: 2023-11-14T00:00:00Z
description: Carry out network-based gene set analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data. Implements methods described in Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>.
author: Michael Hellstern
author: Ali Shojaie
author: Jing Ma
author: Kun Yue
copyright license: GNU General Public License
imports: AnnotationDbi
imports: corpcor
imports: data.table
imports: dplyr
imports: genefilter
imports: graph
imports: graphite
imports: glmnet
imports: glassoFast
imports: httr
imports: igraph
imports: magrittr
imports: Matrix
imports: msigdbr
imports: org.Hs.eg.db
imports: quadprog
imports: RCy3
imports: reshape2
imports: rlang
imports: Rcpp
cites work: Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphs
cites work: Analysis of Gene Sets Based on the Underlying Regulatory Network
cites work: Network-based pathway enrichment analysis with incomplete network information
depends on software: R
MaRDI profile type: Software
description: Network-Based Gene Set Analysis