Rapid ab initio prediction of RNA pseudoknots via graph tree decomposition
type: Item
instance of: scholarly article
title: Rapid ab initio prediction of RNA pseudoknots via graph tree decomposition
zbMATH Open document ID: 1143.92016
author: Jizhen Zhao
author: Russell L. Malmberg
author: Liming Cai
published in: Journal of Mathematical Biology
publication date: 2008-08-18T00:00:00Z
Mathematics Subject Classification ID: 92C40
Mathematics Subject Classification ID: 05C90
Mathematics Subject Classification ID: 90C90
Mathematics Subject Classification ID: 92-08
zbMATH DE Number: 5312976
zbMATH Keywords: RNA secondary structure prediction
zbMATH Keywords: pseudoknot
zbMATH Keywords: thermodynamic energy
zbMATH Keywords: tree decomposition
zbMATH Keywords: tree width
zbMATH Keywords: maximum independent set
Wikidata QID: Q51625280
describes a project that uses: HotKnots
describes a project that uses: RNAshapes
describes a project that uses: Pfold
MaRDI profile type: Publication
full work available at URL: s00285-007-0124-4
OpenAlex ID: W1986193692
cites work: Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
cites work: Biological Sequence Analysis
cites work: Algorithms for Loop Matchings
cites work: Graph minors. II. Algorithmic aspects of tree-width
cites work: Tree adjoining grammars for RNA structure prediction
DOI: 10.1007/S00285-007-0124-4
description: scientific article; zbMATH DE number 5312976