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Vignette dataset for RWireX (GitHub) - MaRDI portal

Vignette dataset for RWireX (GitHub)

From MaRDI portal



DOI10.5281/zenodo.13142236Zenodo13142236MaRDI QIDQ6691767

Dataset published at Zenodo repository.

Author name not available (Why is that?)

Publication date: 1 August 2024

Copyright license: No records found.



Description

This repository contains a dataset for a vignette of the RWireX software, which is available via Github at https://github.com/RippeLab/RWireX. RWireX is a computational tool for analyzing co-accessibility in single-cell ATAC-seq data, implemented as an extension of the ArchR package. It offers two workflows: a single-cell approach to identify autonomous links of co-accessibility (ACs) and a metacell approach to detect domains of contiguous co-accessibility (DCs). With the dataset provided in this archive, both workflows and the associated visualization can be conducted as described in the RWireX wiki.






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