Circular helix-like curve: an effective tool of biological sequence analysis and comparison (Q519603)
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scientific article; zbMATH DE number 6701120
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | Circular helix-like curve: an effective tool of biological sequence analysis and comparison |
scientific article; zbMATH DE number 6701120 |
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Circular helix-like curve: an effective tool of biological sequence analysis and comparison (English)
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5 April 2017
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Summary: This paper constructed a novel injection from a DNA sequence to a 3D graph, named circular helix-like curve (CHC). The presented graphical representation is available for visualizing characterizations of a single DNA sequence and identifying similarities and differences among several DNAs. A 12-dimensional vector extracted from CHC, as a numerical characterization of CHC, was applied to analyze phylogenetic relationships of 11 species, 74 ribosomal RNAs, 48 Hepatitis E viruses, and 18 eutherian mammals, respectively. Successful experiments illustrated that CHC is an effective tool of biological sequence analysis and comparison.
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circular helix-like curve
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DNA sequence
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phylogenetic relationships
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0.81228596
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0.80698127
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0.8055159
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0.79893786
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