Deprecated: $wgMWOAuthSharedUserIDs=false is deprecated, set $wgMWOAuthSharedUserIDs=true, $wgMWOAuthSharedUserSource='local' instead [Called from MediaWiki\HookContainer\HookContainer::run in /var/www/html/w/includes/HookContainer/HookContainer.php at line 135] in /var/www/html/w/includes/Debug/MWDebug.php on line 372
Vignette dataset for RWireX (GitHub) - MaRDI portal

Deprecated: Use of MediaWiki\Skin\SkinTemplate::injectLegacyMenusIntoPersonalTools was deprecated in Please make sure Skin option menus contains `user-menu` (and possibly `notifications`, `user-interface-preferences`, `user-page`) 1.46. [Called from MediaWiki\Skin\SkinTemplate::getPortletsTemplateData in /var/www/html/w/includes/Skin/SkinTemplate.php at line 691] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of MediaWiki\Skin\BaseTemplate::getPersonalTools was deprecated in 1.46 Call $this->getSkin()->getPersonalToolsForMakeListItem instead (T422975). [Called from Skins\Chameleon\Components\NavbarHorizontal\PersonalTools::getHtml in /var/www/html/w/skins/chameleon/src/Components/NavbarHorizontal/PersonalTools.php at line 66] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Deprecated: Use of QuickTemplate::(get/html/text/haveData) with parameter `personal_urls` was deprecated in MediaWiki Use content_navigation instead. [Called from MediaWiki\Skin\QuickTemplate::get in /var/www/html/w/includes/Skin/QuickTemplate.php at line 131] in /var/www/html/w/includes/Debug/MWDebug.php on line 372

Vignette dataset for RWireX (GitHub) (Q6691767)

From MaRDI portal





Dataset published at Zenodo repository.
Language Label Description Also known as
English
Vignette dataset for RWireX (GitHub)
Dataset published at Zenodo repository.

    Statements

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    This repository contains a dataset for a vignette of the RWireX software, which is available via Github at https://github.com/RippeLab/RWireX. RWireX is a computational tool for analyzing co-accessibility in single-cell ATAC-seq data, implemented as an extension of the ArchR package. It offers two workflows: a single-cell approach to identify autonomous links of co-accessibility (ACs) and a metacell approach to detect domains of contiguous co-accessibility (DCs). With the dataset provided in this archive, both workflows and the associated visualization can be conducted as described in the RWireX wiki.
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    1 August 2024
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