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diversitree - MaRDI portal

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diversitree (Q37854)

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Comparative 'Phylogenetic' Analyses of Diversification
Language Label Description Also known as
English
diversitree
Comparative 'Phylogenetic' Analyses of Diversification

    Statements

    instance of
    R package
    0 references
    software version identifier
    0.9-16
    publication date
    11 June 2021
    0 references
    0.9-18
    publication date
    3 May 2023
    0 references
    0.6-2
    publication date
    16 December 2010
    0 references
    0.6-3
    publication date
    27 January 2011
    0 references
    0.6-5
    publication date
    24 April 2011
    0 references
    0.7-2
    publication date
    13 May 2011
    0 references
    0.9-1
    publication date
    15 March 2012
    0 references
    0.9-3
    publication date
    8 May 2012
    0 references
    0.9-5
    publication date
    13 June 2013
    0 references
    0.9-6
    publication date
    13 June 2013
    0 references
    0.9-7
    publication date
    20 February 2014
    0 references
    0.9-8
    publication date
    21 December 2015
    0 references
    0.9-9
    publication date
    5 October 2016
    0 references
    0.9-10
    publication date
    5 April 2017
    0 references
    0.9-11
    publication date
    14 March 2019
    0 references
    0.9-13
    publication date
    16 January 2020
    0 references
    0.9-14
    publication date
    4 September 2020
    0 references
    0.9-15
    publication date
    24 November 2020
    0 references
    0.9-19
    publication date
    17 August 2023
    0 references
    0.9-20
    publication date
    6 September 2023
    0 references
    0.10-0
    publication date
    20 December 2023
    0 references
    programmed in
    R
    0 references
    last update
    20 December 2023
    0 references
    description
    Contains a number of comparative 'phylogenetic' methods, mostly focusing on analysing diversification and character evolution. Contains implementations of 'BiSSE' (Binary State 'Speciation' and Extinction) and its unresolved tree extensions, 'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE', 'GeoSSE', and 'BiSSE-ness' Other included methods include Markov models of discrete and continuous trait evolution and constant rate 'speciation' and extinction.
    0 references
    author
    Richard G. Fitzjohn
    0 references
    Emma Goldberg
    0 references
    Karen Magnuson-Ford
    0 references
    Roger Sidje
    0 references
    depends on software
    methods
    0 references
    ape
    0 references
    R
    software version identifier
    ≥ 2.10
    0 references
    imports
    deSolve
    software version identifier
    ≥ 1.7
    0 references
    graphics
    0 references
    grDevices
    0 references
    stats
    0 references
    subplex
    0 references
    Rcpp
    software version identifier
    ≥ 0.10.0
    0 references

    Identifiers

    swMATH work ID
    26122
    0 references
    CRAN project
    diversitree
    0 references
     
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